feat(viewer): v5 grid 2x2 + datebar calendar + mission label

- NAV viewer v5: grid 2x2 (map + charts), trail slider, play, layer toggles
- Datebar: date picker + datalist, fetches /api/data-dates from :8766
- Mission label shows #NN-folder (X sessions) in green or grey
- Tools: parse_usv_nav, extract_mcap_signals, extract_usv_pwm, merge_nav_usbl, usbl_to_json, check_sync, parse_kogger_usbl
- Vendor: Kogger-Protocol docs
This commit is contained in:
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2026-04-27 13:48:36 +00:00
parent ad6c197f5c
commit 6f2f6d2d72
13 changed files with 1751 additions and 250 deletions

71
tools/check_sync.py Normal file
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#!/usr/bin/env python3
"""Check temporal alignment between MCAP AUV, USV PWM, and USBL data."""
import json, os, sys
from datetime import datetime, timezone
def fmt(ms):
if ms == 0: return 'N/A'
return datetime.fromtimestamp(ms/1000, tz=timezone.utc).strftime('%Y-%m-%d %H:%M:%S')
def load(path):
with open(path) as f:
return json.load(f)
base = os.path.join(os.path.dirname(os.path.dirname(os.path.abspath(__file__))), 'output')
sources = {}
# MCAP signals
mcap_path = os.path.join(base, 'mcap_signals.json')
if os.path.exists(mcap_path):
d = load(mcap_path)
n = len(d.get('depth',[])) + len(d.get('pwm_auv',{}).get('samples',[])) + len(d.get('state',[]))
sources['MCAP AUV'] = {'t_min': d['t_min_utc_ms'], 't_max': d['t_max_utc_ms'], 'n': n}
else:
print(f"MISSING: {mcap_path}")
# USV PWM
usv_path = os.path.join(base, 'usv_pwm.json')
if os.path.exists(usv_path):
d = load(usv_path)
n = sum(len(v) for v in d.get('M',{}).values()) + sum(len(v) for v in d.get('RC',{}).values())
sources['USV PWM'] = {'t_min': d['t_min_utc_ms'], 't_max': d['t_max_utc_ms'], 'n': n}
else:
print(f"MISSING: {usv_path}")
# USBL
usbl_path = os.path.join(base, 'usbl.json')
if os.path.exists(usbl_path):
d = load(usbl_path)
pts = d.get('points', [])
if pts:
t_vals = [p['t_ms'] for p in pts]
sources['USBL'] = {'t_min': min(t_vals), 't_max': max(t_vals), 'n': len(pts)}
else:
sources['USBL'] = {'t_min': 0, 't_max': 0, 'n': 0}
else:
print(f"MISSING: {usbl_path}")
print(f"\n{'Source':<12} | {'t_min UTC':<20} | {'t_max UTC':<20} | {'n_pts':>6}")
print('-' * 68)
for name, s in sources.items():
print(f"{name:<12} | {fmt(s['t_min']):<20} | {fmt(s['t_max']):<20} | {s['n']:>6}")
# Overlap MCAP vs USV
if 'MCAP AUV' in sources and 'USV PWM' in sources:
mcap = sources['MCAP AUV']
usv = sources['USV PWM']
overlap_ms = min(mcap['t_max'], usv['t_max']) - max(mcap['t_min'], usv['t_min'])
print(f"\nMCAP t_min: {fmt(mcap['t_min'])} UTC")
print(f"USV t_min: {fmt(usv['t_min'])} UTC")
diff_min = (mcap['t_min'] - usv['t_min']) / 60000
print(f"t_min diff: {diff_min:+.1f} min (MCAP vs USV)")
if overlap_ms > 60000:
print(f"OK - overlap: {overlap_ms//1000} s")
elif overlap_ms < 0:
print(f"WARNING: no overlap! gap = {-overlap_ms//1000} s")
else:
print(f"SUSPECT: overlap <60s: {overlap_ms//1000} s")
if __name__ == '__main__':
pass

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#!/usr/bin/env python3
"""Extract AUV signals from MCAP files: depth, PWM, state."""
import argparse, glob, json, os, sys
def main():
parser = argparse.ArgumentParser()
parser.add_argument('--session-dir', required=True)
parser.add_argument('--max-pts', type=int, default=5000)
args = parser.parse_args()
session_name = os.path.basename(args.session_dir.rstrip('/'))
pattern = os.path.join(args.session_dir, '*.mcap')
mcap_files = sorted(glob.glob(pattern))
if not mcap_files:
print(f"No MCAP files in {args.session_dir}", file=sys.stderr)
sys.exit(1)
print(f"Found {len(mcap_files)} MCAP files")
try:
from mcap.reader import make_reader
from mcap_ros2.decoder import DecoderFactory
except ImportError as e:
print(f"Import error: {e}", file=sys.stderr)
sys.exit(1)
depth_raw = []
pwm_raw = []
state_raw = []
TOPICS = ['/mavros/imu/static_pressure', '/mavros/rc/out', '/mavros/state']
for mcap_file in mcap_files:
try:
with open(mcap_file, 'rb') as f:
reader = make_reader(f, decoder_factories=[DecoderFactory()])
for schema, channel, message, ros_msg in reader.iter_decoded_messages(topics=TOPICS):
t_ms = message.publish_time // 1_000_000
topic = channel.topic
if topic == '/mavros/imu/static_pressure':
try:
p = float(ros_msg.fluid_pressure)
depth_m = (p - 101325.0) / (1025.0 * 9.80665)
depth_raw.append({'t': t_ms, 'v': round(depth_m, 4)})
except Exception:
pass
elif topic == '/mavros/rc/out':
try:
ch = list(ros_msg.channels)
pwm_raw.append({'t': t_ms, 'v': ch})
except Exception:
pass
elif topic == '/mavros/state':
try:
state_raw.append({'t': t_ms, 'mode': str(ros_msg.mode), 'armed': bool(ros_msg.armed)})
except Exception:
pass
except Exception as e:
print(f" Skip {os.path.basename(mcap_file)}: {e}")
def sample(lst, max_pts):
if len(lst) <= max_pts:
return lst
stride = len(lst) // max_pts
sampled = lst[::stride]
if sampled[-1] is not lst[-1]:
sampled.append(lst[-1])
return sampled
depth = sample(depth_raw, args.max_pts)
pwm_samples = sample(pwm_raw, args.max_pts)
state = state_raw # events, keep all
all_t = [p['t'] for p in depth_raw + pwm_raw + state_raw]
t_min = min(all_t) if all_t else 0
t_max = max(all_t) if all_t else 0
n_ch = max((len(s['v']) for s in pwm_raw), default=0)
channels = list(range(n_ch))
from datetime import datetime, timezone
fmt = lambda ms: datetime.fromtimestamp(ms/1000, tz=timezone.utc).isoformat()
print(f"depth: {len(depth)} pts (raw {len(depth_raw)})")
if depth:
dvals = [p['v'] for p in depth]
print(f" depth range: {min(dvals):.3f} .. {max(dvals):.3f} m")
print(f"pwm_auv: {len(pwm_samples)} samples (raw {len(pwm_raw)}), {n_ch} channels")
print(f"state: {len(state)} events")
print(f"t_min: {fmt(t_min)}")
print(f"t_max: {fmt(t_max)}")
out = {
'session': session_name,
't_min_utc_ms': t_min,
't_max_utc_ms': t_max,
'depth': depth,
'pwm_auv': {'channels': channels, 'samples': pwm_samples},
'state': state,
}
outdir = os.path.join(os.path.dirname(os.path.dirname(os.path.abspath(__file__))), 'output')
os.makedirs(outdir, exist_ok=True)
outpath = os.path.join(outdir, 'mcap_signals.json')
with open(outpath, 'w') as f:
json.dump(out, f)
print(f"Written: {outpath}")
if __name__ == '__main__':
main()

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tools/extract_usv_pwm.py Normal file
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#!/usr/bin/env python3
"""Extract USV PWM signals from navigation log CSVs."""
import argparse, csv, glob, json, os, re, sys
from datetime import datetime, timezone
def main():
parser = argparse.ArgumentParser()
parser.add_argument('--nav-dir', required=True)
args = parser.parse_args()
pattern = os.path.join(args.nav_dir, '*_navigation_log.csv')
csv_files = sorted(glob.glob(pattern))
if not csv_files:
print(f"No navigation_log.csv in {args.nav_dir}", file=sys.stderr)
sys.exit(1)
print(f"Found {len(csv_files)} nav CSV files")
M_data = {}
RC_data = {}
for csv_file in csv_files:
print(f" Parsing {os.path.basename(csv_file)}")
try:
with open(csv_file, 'r') as f:
reader = csv.DictReader(f)
for row in reader:
ts_str = row.get('timestamp', '').strip()
data = row.get('data', '').strip()
val_str = row.get('value', '').strip()
if not ts_str or not data or not val_str:
continue
is_M = re.match(r'^M\d+$', data)
is_RC = re.match(r'^RC\d+$', data)
if not is_M and not is_RC:
continue
try:
val = float(val_str)
except ValueError:
continue
try:
dt = datetime.strptime(ts_str, '%Y-%m-%d %H:%M:%S.%f')
except ValueError:
try:
dt = datetime.strptime(ts_str, '%Y-%m-%d %H:%M:%S')
except ValueError:
continue
# CET -> UTC: subtract 3600s
t_ms = int(dt.timestamp() * 1000) - 3600 * 1000
pt = {'t': t_ms, 'v': val}
if is_M:
M_data.setdefault(data, []).append(pt)
else:
RC_data.setdefault(data, []).append(pt)
except Exception as e:
print(f" Error {csv_file}: {e}")
all_t = []
for pts in list(M_data.values()) + list(RC_data.values()):
all_t.extend(p['t'] for p in pts)
t_min = min(all_t) if all_t else 0
t_max = max(all_t) if all_t else 0
for k in sorted(M_data):
print(f" {k}: {len(M_data[k])} pts")
for k in sorted(RC_data):
print(f" {k}: {len(RC_data[k])} pts")
fmt = lambda ms: datetime.fromtimestamp(ms/1000, tz=timezone.utc).isoformat()
print(f"t_min UTC: {fmt(t_min)}")
print(f"t_max UTC: {fmt(t_max)}")
out = {
'tz_assumed': 'CET (UTC+1)',
'tz_converted_to': 'UTC',
't_min_utc_ms': t_min,
't_max_utc_ms': t_max,
'M': M_data,
'RC': RC_data,
}
outdir = os.path.join(os.path.dirname(os.path.dirname(os.path.abspath(__file__))), 'output')
os.makedirs(outdir, exist_ok=True)
outpath = os.path.join(outdir, 'usv_pwm.json')
with open(outpath, 'w') as f:
json.dump(out, f)
print(f"Written: {outpath}")
if __name__ == '__main__':
main()

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tools/merge_nav_usbl.py Normal file
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#!/usr/bin/env python3
"""
merge_nav_usbl.py — Merge USBL decoded data with USV navigation log
Inputs:
--usbl : combined_usbl.csv (output of parse_kogger_usbl.py)
--nav-dir: directory containing *_navigation_log.csv files
--output : output CSV (default: combined_nav_usbl.csv)
Nav log format: timestamp,data,value (long format)
data=Lat → latitude_deg
data=Lon → longitude_deg
data=Heading → heading_deg
Interpolation: for each USBL timestamp, find nearest nav point within 1s window.
If multiple sessions, use session matching by timestamp overlap.
AUV position calculation:
azimuth_deg from USBL is RELATIVE to USV heading (yaw) based on USBL hardware mounting.
AUV bearing from North = (USV heading + azimuth_deg) mod 360
Horizontal dist = dist_m * cos(elevation_deg * pi/180)
Note: if azimuth is already absolute (referenced to North), do NOT add heading.
Check: usbl_yaw in payload should match nav Heading if relative azimuth.
We use RELATIVE convention (add USV heading) — documented here.
Geodetic forward (haversine):
Using flat-earth approximation valid for distances < 500m:
dlat = horiz_dist * cos(bearing) / R_earth
dlon = horiz_dist * sin(bearing) / (R_earth * cos(lat))
R_earth = 6371000 m
"""
import csv
import io
import sys
import math
import os
R_EARTH = 6371000.0 # meters
def parse_nav_log(nav_file):
"""
Parse navigation_log.csv into:
- nav_points: sorted list of (timestamp_str, lat, lon) from Lat+Lon entries
- heading_series: sorted list of (timestamp_str, heading_deg) from Heading entries
Lat/Lon and Heading have different timestamps so must be interpolated separately.
Returns (nav_points, heading_series).
"""
lat_by_ts = {}
lon_by_ts = {}
heading_series_raw = []
with open(nav_file) as f:
reader = csv.DictReader(f)
for row in reader:
data = row.get('data', '')
ts = row.get('timestamp', '')
try:
val_raw = row.get('value', '') or ''
if not val_raw:
continue
val = float(val_raw)
except (ValueError, TypeError):
continue
if data == 'Lat':
lat_by_ts[ts] = val
elif data == 'Lon':
lon_by_ts[ts] = val
elif data == 'Heading':
heading_series_raw.append((ts, val))
# Build nav_points: timestamps where both Lat and Lon appear (same ts)
nav_points = []
for ts in sorted(set(lat_by_ts.keys()) & set(lon_by_ts.keys())):
nav_points.append((ts, lat_by_ts[ts], lon_by_ts[ts]))
# heading_series sorted by timestamp
heading_series = sorted(heading_series_raw, key=lambda x: x[0])
return nav_points, heading_series
def ts_to_seconds(ts_str):
"""Convert '2026-03-24 09:29:05.230392' to float seconds since epoch (approx)."""
# Simple: parse date+time, compute offset
try:
date_part, time_part = ts_str.strip().split(' ', 1)
y, mo, d = date_part.split('-')
parts = time_part.split(':')
h, m = int(parts[0]), int(parts[1])
s_str = parts[2]
s = float(s_str)
# Days since fixed epoch (don't need absolute, just relative diffs)
total = (int(y)*365 + int(mo)*30 + int(d)) * 86400 + h*3600 + m*60 + s
return total
except Exception:
return 0.0
def find_nearest(ts_sec, series_sec, series, max_gap=1.0):
"""Find nearest entry in sorted series within max_gap seconds."""
best_idx = -1
best_dt = float('inf')
for i, (s_sec, entry) in enumerate(zip(series_sec, series)):
dt = abs(s_sec - ts_sec)
if dt < best_dt:
best_dt = dt
best_idx = i
elif s_sec > ts_sec + max_gap:
break
if best_idx >= 0 and best_dt <= max_gap:
return series[best_idx], best_dt
return None, None
def geodetic_forward(lat_deg, lon_deg, bearing_deg, dist_m):
"""
Compute destination point given start lat/lon, bearing (deg from North), distance (m).
Flat-earth approximation valid for dist < 500m.
"""
bearing_rad = math.radians(bearing_deg)
lat_rad = math.radians(lat_deg)
dlat = dist_m * math.cos(bearing_rad) / R_EARTH
dlon = dist_m * math.sin(bearing_rad) / (R_EARTH * math.cos(lat_rad))
auv_lat = lat_deg + math.degrees(dlat)
auv_lon = lon_deg + math.degrees(dlon)
return auv_lat, auv_lon
def haversine_dist(lat1, lon1, lat2, lon2):
"""Distance in meters between two lat/lon points."""
phi1, phi2 = math.radians(lat1), math.radians(lat2)
dphi = math.radians(lat2 - lat1)
dlam = math.radians(lon2 - lon1)
a = math.sin(dphi/2)**2 + math.cos(phi1)*math.cos(phi2)*math.sin(dlam/2)**2
return 2 * R_EARTH * math.asin(math.sqrt(a))
def find_nav_file_for_session(usbl_file, nav_dir):
"""Match nav file by common timestamp prefix."""
base = os.path.basename(usbl_file)
# e.g. 2026-03-24_09-28-44_USV003_usbl.csv -> 2026-03-24_09-28-44_USV003
prefix = base.replace('_usbl.csv', '')
nav_candidate = os.path.join(nav_dir, prefix + '_navigation_log.csv')
if os.path.exists(nav_candidate):
return nav_candidate
return None
def main():
import argparse
parser = argparse.ArgumentParser()
parser.add_argument('--usbl', required=True, help='combined_usbl.csv')
parser.add_argument('--nav-dir', required=True, help='Directory with *_navigation_log.csv')
parser.add_argument('--output', default='combined_nav_usbl.csv')
parser.add_argument('--max-gap', type=float, default=1.0, help='Max timestamp gap in seconds')
args = parser.parse_args()
# Load USBL records
usbl_records = []
with open(args.usbl) as f:
reader = csv.DictReader(f)
for row in reader:
usbl_records.append(row)
print("USBL records loaded: %d" % len(usbl_records))
# Group by source_file
from collections import defaultdict
by_source = defaultdict(list)
for rec in usbl_records:
by_source[rec.get('source_file', '')].append(rec)
# Load nav files
nav_data = {} # source_file -> (nav_points, nav_points_sec, heading_series, heading_sec)
nav_dir = args.nav_dir
for source_file in by_source.keys():
# Try to match nav file
prefix = source_file.replace('_usbl.csv', '')
nav_file = os.path.join(nav_dir, prefix + '_navigation_log.csv')
if not os.path.exists(nav_file):
# Try to find by scanning directory
matched = None
for fn in os.listdir(nav_dir):
if prefix in fn and 'navigation_log' in fn:
matched = os.path.join(nav_dir, fn)
break
if matched is None:
print("WARNING: no nav file found for %s" % source_file)
nav_data[source_file] = ([], [], [], [])
continue
nav_file = matched
nav_points, heading_series = parse_nav_log(nav_file)
nav_points_sec = [ts_to_seconds(pt[0]) for pt in nav_points]
heading_sec = [ts_to_seconds(h[0]) for h in heading_series]
nav_data[source_file] = (nav_points, nav_points_sec, heading_series, heading_sec)
print("Nav loaded for %s: %d pos points, %d heading points" % (
source_file, len(nav_points), len(heading_series)))
# Process and write output
output_rows = []
stats_match = 0
stats_nomatch = 0
for source_file, records in by_source.items():
nav_points, nav_points_sec, heading_series, heading_sec = nav_data.get(
source_file, ([], [], [], []))
for rec in records:
ts_str = rec.get('Timestamp', '')
ts_sec = ts_to_seconds(ts_str)
dist_str = rec.get('Dist', '')
azimuth_str = rec.get('Azimuth', '')
elev_str = rec.get('Elev', '')
snr_str = rec.get('SNR', '')
try:
dist = float(dist_str) if dist_str else float('nan')
azimuth = float(azimuth_str) if azimuth_str else float('nan')
elev = float(elev_str) if elev_str else float('nan')
snr = float(snr_str) if snr_str else float('nan')
except ValueError:
dist, azimuth, elev, snr = float('nan'), float('nan'), float('nan'), float('nan')
nav_pt, dt = find_nearest(ts_sec, nav_points_sec, nav_points, args.max_gap)
hdg_pt, _ = find_nearest(ts_sec, heading_sec, heading_series, args.max_gap)
if nav_pt is None:
stats_nomatch += 1
lat_usv, lon_usv, heading_usv = float('nan'), float('nan'), float('nan')
auv_lat, auv_lon = float('nan'), float('nan')
else:
stats_match += 1
_, lat_usv, lon_usv = nav_pt
heading_usv = hdg_pt[1] if hdg_pt is not None else float('nan')
# Calculate AUV absolute position
# Azimuth from USBL is relative to USV heading (yaw convention)
# AUV bearing from North = (USV Heading + azimuth_deg) mod 360
if not (math.isnan(dist) or math.isnan(azimuth) or
math.isnan(lat_usv) or math.isnan(heading_usv)):
horiz_dist = dist * math.cos(math.radians(elev)) if not math.isnan(elev) else dist
abs_bearing = (heading_usv + azimuth) % 360
auv_lat, auv_lon = geodetic_forward(lat_usv, lon_usv, abs_bearing, horiz_dist)
else:
auv_lat, auv_lon = float('nan'), float('nan')
output_rows.append({
'Timestamp': ts_str,
'lat': '%.7f' % lat_usv if not math.isnan(lat_usv) else '',
'lon': '%.7f' % lon_usv if not math.isnan(lon_usv) else '',
'Heading': '%.2f' % heading_usv if not math.isnan(heading_usv) else '',
'Dist': '%.4f' % dist if not math.isnan(dist) else '',
'Azimuth': '%.4f' % azimuth if not math.isnan(azimuth) else '',
'Elev': '%.4f' % elev if not math.isnan(elev) else '',
'SNR': '%.4f' % snr if not math.isnan(snr) else '',
'auv_lat': '%.7f' % auv_lat if not math.isnan(auv_lat) else '',
'auv_lon': '%.7f' % auv_lon if not math.isnan(auv_lon) else '',
'nav_dt_s': '%.3f' % dt if dt is not None else '',
})
print("\n=== Merge stats ===")
print("Matched: %d No nav match: %d" % (stats_match, stats_nomatch))
with open(args.output, 'w', newline='') as f:
writer = csv.writer(f)
writer.writerow(['Timestamp', 'lat', 'lon', 'Heading', 'Dist', 'Azimuth', 'Elev', 'SNR',
'auv_lat', 'auv_lon', 'nav_dt_s'])
for row in output_rows:
writer.writerow([
row['Timestamp'], row['lat'], row['lon'], row['Heading'],
row['Dist'], row['Azimuth'], row['Elev'], row['SNR'],
row['auv_lat'], row['auv_lon'], row['nav_dt_s']
])
print("Output: %s (%d rows)" % (args.output, len(output_rows)))
# Sample output
if output_rows:
print("\n=== Sample (first 5 rows) ===")
print("Timestamp,lat,lon,Heading,Dist,Azimuth,Elev,SNR,auv_lat,auv_lon")
for row in output_rows[:5]:
print("%s,%s,%s,%s,%s,%s,%s,%s,%s,%s" % (
row['Timestamp'], row['lat'], row['lon'], row['Heading'],
row['Dist'], row['Azimuth'], row['Elev'], row['SNR'],
row['auv_lat'], row['auv_lon']))
# AUV position stats
auv_lats = [float(r['auv_lat']) for r in output_rows if r['auv_lat']]
auv_lons = [float(r['auv_lon']) for r in output_rows if r['auv_lon']]
usv_lats = [float(r['lat']) for r in output_rows if r['lat']]
usv_lons = [float(r['lon']) for r in output_rows if r['lon']]
if auv_lats and usv_lats:
print("\n=== Position stats ===")
print("AUV lat range: %.6f - %.6f" % (min(auv_lats), max(auv_lats)))
print("AUV lon range: %.6f - %.6f" % (min(auv_lons), max(auv_lons)))
print("USV lat range: %.6f - %.6f" % (min(usv_lats), max(usv_lats)))
# Average USV-AUV distance
dists = []
for r in output_rows:
if r['lat'] and r['auv_lat']:
d = haversine_dist(float(r['lat']), float(r['lon']),
float(r['auv_lat']), float(r['auv_lon']))
dists.append(d)
if dists:
print("Avg USV-AUV dist: %.2f m (min=%.2f max=%.2f)" % (
sum(dists)/len(dists), min(dists), max(dists)))
if __name__ == '__main__':
main()

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tools/parse_kogger_usbl.py Normal file
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#!/usr/bin/env python3
"""
parse_kogger_usbl.py — Decode Kogger USBL raw CSV files (SBP protocol)
Protocol spec:
Frame: BB 55 | ROUTE | MODE | ID | LENGTH | PAYLOAD[LENGTH] | CHKSUM1 | CHKSUM2
Checksum: Fletcher-16 over (ROUTE + MODE + ID + LENGTH + PAYLOAD)
Frame ID 0x65 = ID_USBL_SOLUTION
Struct (packed, little-endian):
id(U1) role(U1) watermark(U2)
timestamp_us(S8) ping_counter(U4) carrier_counter(S8)
distance_m(F4) distance_unc(F4)
azimuth_deg(F4) azimuth_unc(F4)
elevation_deg(F4) elevation_unc(F4)
snr(F4)
x_m(F4) y_m(F4) latitude_deg(D8) longitude_deg(D8) depth_m(F4)
usbl_yaw(F4) usbl_pitch(F4) usbl_roll(F4)
usbl_latitude(D8) usbl_longitude(D8) last_iTOW(U4)
beacon_n(F4) beacon_e(F4)
[+ 32 bytes extra NaN padding observed in firmware v2]
Timestamp assignment: timestamp from the last RECEIVED packet before the frame sync byte.
Usage:
python3 parse_kogger_usbl.py FILE1.csv [FILE2.csv ...] -o combined_usbl.csv
"""
import ast
import csv
import io
import os
import struct
import sys
import collections
import math
SYNC = b"\xbb\x55"
ID_USBL_SOLUTION = 0x65
USBL_FMT = '<BBHqIq' + 'f'*7 + 'ff' + 'dd' + 'f' + 'fff' + 'dd' + 'I' + 'ff'
USBL_FMT_SIZE = struct.calcsize(USBL_FMT)
def parse_bytes_field(field):
"""Parse b'...' Python literal from CSV field."""
field = field.strip()
if not (field.startswith("b'") or field.startswith('b"')):
return b""
try:
result = ast.literal_eval(field)
if isinstance(result, str):
result = result.encode('latin-1')
return result
except Exception:
return b""
def fletcher16(data):
c1, c2 = 0, 0
for byte in data:
c1 = (c1 + byte) & 0xFF
c2 = (c2 + c1) & 0xFF
return c1, c2
def parse_usbl_csv(csv_file):
"""
Parse a raw USBL CSV file, reconstruct byte stream, decode SBP frames.
Returns list of dicts with decoded USBL_SOLUTION data.
"""
with open(csv_file) as f:
content = f.read()
buf = b""
ts_offsets = [] # (byte_offset_in_buf, timestamp_str)
reader = csv.reader(io.StringIO(content))
for row in reader:
if len(row) < 3:
continue
ts, direction, raw = row[0], row[1], row[2]
if direction != "RECEIVED":
continue
b = parse_bytes_field(raw)
if b:
off = len(buf)
buf += b
ts_offsets.append((off, ts))
# Find all BB55 sync positions
positions = []
i = 0
while True:
pos = buf.find(SYNC, i)
if pos == -1:
break
positions.append(pos)
i = pos + 1
frame_id_counter = collections.Counter()
usbl_records = []
valid_total = 0
for pos in positions:
if pos + 6 > len(buf):
continue
route = buf[pos+2]
mode = buf[pos+3]
frame_id = buf[pos+4]
length = buf[pos+5]
if pos + 6 + length + 2 > len(buf):
continue
payload = buf[pos+6:pos+6+length]
chk1_a = buf[pos+6+length]
chk2_a = buf[pos+6+length+1]
c1, c2 = fletcher16(buf[pos+2:pos+6+length])
if c1 != chk1_a or c2 != chk2_a:
continue
valid_total += 1
frame_id_counter[frame_id] += 1
if frame_id != ID_USBL_SOLUTION:
continue
# Get timestamp: last ts_offset entry before this position
ts = ts_offsets[0][1] if ts_offsets else ""
for off, t in ts_offsets:
if off <= pos:
ts = t
else:
break
if len(payload) < USBL_FMT_SIZE:
continue
fields = struct.unpack_from(USBL_FMT, payload)
rec = {
'Timestamp': ts,
'usbl_id': fields[0],
'usbl_role': fields[1],
'usbl_timestamp_us': fields[3],
'ping_counter': fields[4],
'Dist': fields[6],
'dist_unc': fields[7],
'Azimuth': fields[8],
'azimuth_unc': fields[9],
'Elev': fields[10],
'elev_unc': fields[11],
'SNR': fields[12],
'x_m': fields[13],
'y_m': fields[14],
'usbl_lat_computed': fields[15],
'usbl_lon_computed': fields[16],
'depth_m': fields[17],
'usbl_yaw': fields[18],
'usbl_pitch': fields[19],
'usbl_roll': fields[20],
'source_file': os.path.basename(csv_file),
}
usbl_records.append(rec)
return usbl_records, frame_id_counter, valid_total, len(positions)
def main():
import argparse
parser = argparse.ArgumentParser(description='Decode Kogger USBL raw CSV files')
parser.add_argument('files', nargs='+', help='Input *_usbl.csv files')
parser.add_argument('-o', '--output', default='combined_usbl.csv', help='Output CSV')
args = parser.parse_args()
all_records = []
total_sync = 0
total_valid = 0
global_id_counter = collections.Counter()
for csv_file in args.files:
print("Processing: %s" % csv_file)
records, id_counter, valid, n_sync = parse_usbl_csv(csv_file)
all_records.extend(records)
total_sync += n_sync
total_valid += valid
global_id_counter.update(id_counter)
print(" Sync markers: %d Valid frames: %d USBL records: %d" % (n_sync, valid, len(records)))
print("\n=== Summary ===")
print("Total sync markers (BB55): %d" % total_sync)
print("Total valid frames: %d" % total_valid)
print("Total USBL_SOLUTION records: %d" % len(all_records))
print("\nFrame ID histogram:")
for fid, cnt in sorted(global_id_counter.items(), key=lambda x: -x[1]):
name = "USBL_SOLUTION" if fid == 0x65 else ("USBL_CONTROL" if fid == 0x68 else "UNKNOWN")
print(" ID=0x%02x(%3d) %-15s : %d frames" % (fid, fid, name, cnt))
if all_records:
dists = [r['Dist'] for r in all_records if not math.isnan(r['Dist'])]
azs = [r['Azimuth'] for r in all_records if not math.isnan(r['Azimuth'])]
snrs = [r['SNR'] for r in all_records if not math.isnan(r['SNR'])]
if dists:
dists_sorted = sorted(dists)
n = len(dists_sorted)
median = dists_sorted[n//2]
print("\nDist (m): min=%.2f median=%.2f max=%.2f" % (min(dists), median, max(dists)))
if azs:
print("Azimuth : min=%.2f max=%.2f" % (min(azs), max(azs)))
if snrs:
print("SNR : min=%.2f max=%.2f" % (min(snrs), max(snrs)))
# Write output CSV
with open(args.output, 'w', newline='') as f:
writer = csv.writer(f)
writer.writerow(['Timestamp', 'Dist', 'Azimuth', 'Elev', 'SNR', 'FrameID',
'x_m', 'y_m', 'depth_m', 'dist_unc', 'azimuth_unc', 'elev_unc',
'usbl_yaw', 'usbl_pitch', 'usbl_roll', 'source_file'])
for r in all_records:
writer.writerow([
r['Timestamp'],
'' if math.isnan(r['Dist']) else '%.4f' % r['Dist'],
'' if math.isnan(r['Azimuth']) else '%.4f' % r['Azimuth'],
'' if math.isnan(r['Elev']) else '%.4f' % r['Elev'],
'' if math.isnan(r['SNR']) else '%.4f' % r['SNR'],
'0x65',
'' if math.isnan(r['x_m']) else '%.4f' % r['x_m'],
'' if math.isnan(r['y_m']) else '%.4f' % r['y_m'],
'' if math.isnan(r['depth_m']) else '%.4f' % r['depth_m'],
'%.4f' % r['dist_unc'],
'%.4f' % r['azimuth_unc'],
'%.4f' % r['elev_unc'],
'%.4f' % r['usbl_yaw'],
'%.4f' % r['usbl_pitch'],
'%.4f' % r['usbl_roll'],
r['source_file'],
])
print("\nOutput: %s (%d records)" % (args.output, len(all_records)))
if __name__ == '__main__':
main()

View File

@@ -1,24 +1,39 @@
#!/usr/bin/env python3
"""Parse USV long-format CSV → track.geojson + points.json"""
"""Parse USV long-format CSV → track.geojson + points.json + manifest.json
v2: multi-session support via --input-dir, retro-compat with --input (single file)
"""
import argparse
import csv
import glob
import json
import os
import sys
from collections import defaultdict
from datetime import datetime, timezone
MAX_SLIDER_POINTS = 5000
MAX_SLIDER_POINTS = 10000
def parse_args():
p = argparse.ArgumentParser(description="Parse USV nav CSV")
p.add_argument("--input", required=True, help="CSV navigation log")
p = argparse.ArgumentParser(description="Parse USV nav CSV v2")
g = p.add_mutually_exclusive_group(required=True)
g.add_argument("--input", help="Single CSV navigation log (v1 compat)")
g.add_argument("--input-dir", help="Directory: glob *navigation_log*.csv")
p.add_argument("--output", required=True, help="Output directory")
return p.parse_args()
def find_csvs(input_dir):
pattern = os.path.join(input_dir, "*navigation_log*.csv")
files = sorted(glob.glob(pattern))
if not files:
print(f"No navigation_log CSVs found in {input_dir}", file=sys.stderr)
sys.exit(1)
return files
def load_csv(path):
"""Load long-format CSV into {timestamp: {field: value}}"""
"""Load long-format CSV {timestamp: {field: value}}"""
rows_by_ts = defaultdict(dict)
with open(path, newline="", encoding="utf-8") as f:
reader = csv.DictReader(f)
@@ -41,13 +56,26 @@ def get_float(d, *keys):
return None
def build_points(rows_by_ts):
"""Build sorted list of {t, lat, lon, heading} where lat/lon valid."""
# We need to track last known lat/lon/heading per timestamp cluster.
# Strategy: walk timestamps in order, emit a point each time we see a Lat or Lon update.
# Accumulate state across timestamps.
timestamps = sorted(rows_by_ts.keys())
def ts_to_ms(ts_str):
"""Convert ISO-like timestamp string to epoch ms (UTC)."""
# Try formats: '2026-03-24 09:04:07.123456' or '2026-03-24T09:04:07.123456'
for fmt in (
"%Y-%m-%dT%H:%M:%S.%f",
"%Y-%m-%dT%H:%M:%S",
"%Y-%m-%d %H:%M:%S.%f",
"%Y-%m-%d %H:%M:%S",
):
try:
dt = datetime.strptime(ts_str, fmt).replace(tzinfo=timezone.utc)
return int(dt.timestamp() * 1000)
except ValueError:
continue
return None
def build_points(rows_by_ts, source_name):
"""Build sorted list of {t, t_ms, lat, lon, heading, source}."""
timestamps = sorted(rows_by_ts.keys())
state = {}
points = []
@@ -55,7 +83,6 @@ def build_points(rows_by_ts):
updates = rows_by_ts[ts]
state.update(updates)
# Only emit point if we have both Lat and Lon from this or earlier ts
lat = get_float(state, "Lat", "RAW_Lat")
lon = get_float(state, "Lon", "RAW_Lon")
heading = get_float(state, "Heading", "Yaw")
@@ -64,7 +91,6 @@ def build_points(rows_by_ts):
continue
if lat == 0.0 and lon == 0.0:
continue
# GPS_RAW_INT fallback (1e-7 degrees)
if abs(lat) < 1 and abs(lon) < 1:
raw_lat = get_float(state, "GPS_RAW_INT_lat")
raw_lon = get_float(state, "GPS_RAW_INT_lon")
@@ -74,87 +100,200 @@ def build_points(rows_by_ts):
else:
continue
# Only emit if Lat or Lon just updated (reduce duplicate consecutive points)
if "Lat" in updates or "Lon" in updates or "RAW_Lat" in updates or "RAW_Lon" in updates:
t_ms = ts_to_ms(ts)
points.append({
"t": ts,
"t_ms": t_ms,
"lat": round(lat, 8),
"lon": round(lon, 8),
"heading": round(heading, 2) if heading is not None else None,
"source": source_name,
})
return points
def sample_points(points, max_n):
if len(points) <= max_n:
def sample_points_session(points, max_total, n_sessions):
"""Sample per session, always keeping first+last point of each session."""
if not points:
return points
step = len(points) / max_n
return [points[int(i * step)] for i in range(max_n)]
quota = max(10, max_total // max(n_sessions, 1))
if len(points) <= quota:
return points
step = (len(points) - 2) / max(quota - 2, 1)
sampled = [points[0]]
for i in range(1, quota - 1):
sampled.append(points[min(int(1 + i * step), len(points) - 2)])
sampled.append(points[-1])
return sampled
def write_geojson(points, path):
coords = [[p["lon"], p["lat"]] for p in points]
geojson = {
"type": "FeatureCollection",
"features": [{
def session_bbox(points):
lats = [p["lat"] for p in points]
lons = [p["lon"] for p in points]
return [min(lons), min(lats), max(lons), max(lats)]
def write_outputs(all_sessions, output_dir):
"""Write track.geojson, points.json, manifest.json."""
os.makedirs(output_dir, exist_ok=True)
# Colors for multi-track
COLORS = ["#00b4d8", "#e94560", "#06d6a0", "#ffd166", "#a855f7", "#f97316"]
# ── track.geojson (MultiLineString per session) ──
features = []
for i, sess in enumerate(all_sessions):
coords = [[p["lon"], p["lat"]] for p in sess["points"]]
features.append({
"type": "Feature",
"geometry": {"type": "LineString", "coordinates": coords},
"properties": {
"start": points[0]["t"] if points else None,
"end": points[-1]["t"] if points else None,
"n_points": len(points),
"source_file": sess["source_file"],
"source_name": sess["source_name"],
"start_iso": sess["t_start"],
"end_iso": sess["t_end"],
"n_points": len(coords),
"color": COLORS[i % len(COLORS)],
"session_index": i,
}
}]
}
with open(path, "w") as f:
})
geojson = {"type": "FeatureCollection", "features": features}
geo_path = os.path.join(output_dir, "track.geojson")
with open(geo_path, "w") as f:
json.dump(geojson, f)
print(f" track.geojson: {len(coords)} coords → {path}")
print(f" track.geojson: {len(features)} sessions → {geo_path}")
# ── points.json (all sampled, sorted by t_ms) ──
all_points = []
n_sessions = len(all_sessions)
for sess in all_sessions:
sampled = sample_points_session(sess["points"], MAX_SLIDER_POINTS, n_sessions)
all_points.extend(sampled)
# Sort by t_ms (sessions may overlap in time)
all_points.sort(key=lambda p: (p["t_ms"] or 0))
pts_path = os.path.join(output_dir, "points.json")
with open(pts_path, "w") as f:
json.dump(all_points, f)
print(f" points.json: {len(all_points)} points (sampled) → {pts_path}")
# ── manifest.json ──
all_lats = [p["lat"] for s in all_sessions for p in s["points"]]
all_lons = [p["lon"] for s in all_sessions for p in s["points"]]
global_bbox = [min(all_lons), min(all_lats), max(all_lons), max(all_lats)]
all_t_ms = [p["t_ms"] for s in all_sessions for p in s["points"] if p["t_ms"]]
t_min_ms = min(all_t_ms) if all_t_ms else None
t_max_ms = max(all_t_ms) if all_t_ms else None
sessions_meta = []
for sess in all_sessions:
sessions_meta.append({
"file": sess["source_file"],
"source_name": sess["source_name"],
"n_points": sess["n_points_raw"],
"t_start": sess["t_start"],
"t_end": sess["t_end"],
"t_start_ms": sess["t_start_ms"],
"t_end_ms": sess["t_end_ms"],
"bbox": sess["bbox"],
})
manifest = {
"generated_at": datetime.now(timezone.utc).isoformat(),
"n_sessions": len(all_sessions),
"sessions": sessions_meta,
"global_bbox": global_bbox,
"t_min": all_sessions[0]["t_start"] if all_sessions else None,
"t_max": all_sessions[-1]["t_end"] if all_sessions else None,
"t_min_ms": t_min_ms,
"t_max_ms": t_max_ms,
"n_points_total_raw": sum(s["n_points_raw"] for s in all_sessions),
"n_points_sampled": len(all_points),
}
mf_path = os.path.join(output_dir, "manifest.json")
with open(mf_path, "w") as f:
json.dump(manifest, f, indent=2)
print(f" manifest.json → {mf_path}")
return manifest
def write_points_json(points, path):
with open(path, "w") as f:
json.dump(points, f)
print(f" points.json: {len(points)} points → {path}")
def print_global_stats(manifest, all_sessions):
print(f"\n=== Stats globales ===")
print(f" Sessions: {manifest['n_sessions']}")
print(f" Points bruts: {manifest['n_points_total_raw']}")
print(f" Points sampled: {manifest['n_points_sampled']}")
print(f" t_min: {manifest['t_min']}")
print(f" t_max: {manifest['t_max']}")
bb = manifest["global_bbox"]
print(f" Bbox: lon [{bb[0]:.5f}, {bb[2]:.5f}] lat [{bb[1]:.5f}, {bb[3]:.5f}]")
if manifest["t_min_ms"] and manifest["t_max_ms"]:
dur_s = (manifest["t_max_ms"] - manifest["t_min_ms"]) / 1000
h, rem = divmod(int(dur_s), 3600)
m, s = divmod(rem, 60)
print(f" Durée totale: {h}h{m:02d}m{s:02d}s")
for i, sess in enumerate(all_sessions):
print(f" Session {i+1}: {sess['source_name']} {sess['n_points_raw']} pts {sess['t_start']}{sess['t_end']}")
def print_stats(points):
def process_file(path):
source_name = os.path.basename(path)
print(f"\nChargement {source_name} ...")
rows = load_csv(path)
print(f" {len(rows)} timestamps uniques")
points = build_points(rows, source_name)
if not points:
print("No valid points found!")
return
print(f" WARNING: aucun point GPS valide dans {source_name}")
return None
# Filter points without t_ms
points = [p for p in points if p["t_ms"] is not None]
lats = [p["lat"] for p in points]
lons = [p["lon"] for p in points]
print(f"\n=== Stats ===")
print(f" N points (full): {len(points)}")
print(f" First ts: {points[0]['t']}")
print(f" Last ts: {points[-1]['t']}")
print(f" Bbox lat: {min(lats):.6f}{max(lats):.6f}")
print(f" Bbox lon: {min(lons):.6f}{max(lons):.6f}")
headings = [p["heading"] for p in points if p["heading"] is not None]
print(f" Heading data: {'yes' if headings else 'no'} ({len(headings)} values)")
return {
"source_file": path,
"source_name": source_name,
"points": points,
"n_points_raw": len(points),
"t_start": points[0]["t"],
"t_end": points[-1]["t"],
"t_start_ms": points[0]["t_ms"],
"t_end_ms": points[-1]["t_ms"],
"bbox": [min(lons), min(lats), max(lons), max(lats)],
}
def main():
args = parse_args()
os.makedirs(args.output, exist_ok=True)
print(f"Loading {args.input} ...")
rows = load_csv(args.input)
print(f" {len(rows)} unique timestamps")
if args.input:
csv_files = [args.input]
else:
csv_files = find_csvs(args.input_dir)
points = build_points(rows)
print_stats(points)
print(f"Fichiers trouvés: {len(csv_files)}")
for f in csv_files:
print(f" {os.path.basename(f)}")
if not points:
all_sessions = []
for path in csv_files:
sess = process_file(path)
if sess:
all_sessions.append(sess)
if not all_sessions:
print("Aucune session valide.", file=sys.stderr)
sys.exit(1)
write_geojson(points, os.path.join(args.output, "track.geojson"))
sampled = sample_points(points, MAX_SLIDER_POINTS)
if len(sampled) < len(points):
print(f" Sampled {len(sampled)} points for slider (from {len(points)})")
write_points_json(sampled, os.path.join(args.output, "points.json"))
manifest = write_outputs(all_sessions, args.output)
print_global_stats(manifest, all_sessions)
print("\nDone.")

125
tools/usbl_to_json.py Normal file
View File

@@ -0,0 +1,125 @@
#!/usr/bin/env python3
"""usbl_to_json.py - Convert combined_nav_usbl.csv to usbl.json + auv_track.geojson"""
import csv, json, math, argparse, statistics
from datetime import datetime, timezone
from pathlib import Path
ROOT = Path(__file__).resolve().parent.parent
DEFAULT_INPUT = ROOT / "output" / "combined_nav_usbl.csv"
OUTPUT_DIR = ROOT / "output"
def parse_ts(s):
for fmt in ("%Y-%m-%d %H:%M:%S.%f", "%Y-%m-%d %H:%M:%S"):
try:
dt = datetime.strptime(s.strip(), fmt).replace(tzinfo=timezone.utc)
return int(dt.timestamp() * 1000)
except ValueError:
pass
return None
def haversine_m(lat1, lon1, lat2, lon2):
R = 6371000.0
phi1, phi2 = math.radians(lat1), math.radians(lat2)
dphi = math.radians(lat2 - lat1)
dlam = math.radians(lon2 - lon1)
a = math.sin(dphi/2)**2 + math.cos(phi1)*math.cos(phi2)*math.sin(dlam/2)**2
return R * 2 * math.atan2(math.sqrt(a), math.sqrt(1-a))
def main():
ap = argparse.ArgumentParser()
ap.add_argument("--input", default=str(DEFAULT_INPUT))
ap.add_argument("--max-points", type=int, default=10000)
args = ap.parse_args()
rows = []
with open(args.input, newline="") as f:
reader = csv.DictReader(f)
for row in reader:
try:
dist = float(row["Dist"])
auv_lat = float(row["auv_lat"])
auv_lon = float(row["auv_lon"])
except (ValueError, KeyError):
continue
if dist <= 0 or auv_lat == 0 or auv_lon == 0:
continue
t_ms = parse_ts(row["Timestamp"])
if t_ms is None:
continue
rows.append({
"t": row["Timestamp"].strip(),
"t_ms": t_ms,
"usv_lat": float(row["lat"]),
"usv_lon": float(row["lon"]),
"heading": float(row["Heading"]),
"dist": dist,
"az": float(row["Azimuth"]),
"elev": float(row["Elev"]),
"snr": float(row["SNR"]),
"auv_lat": auv_lat,
"auv_lon": auv_lon,
})
rows.sort(key=lambda r: r["t_ms"])
n_raw = len(rows)
# Sample if > max-points (preserve begin/end)
if n_raw > args.max_points:
step = n_raw / args.max_points
indices = set()
indices.add(0)
indices.add(n_raw - 1)
for i in range(1, args.max_points - 1):
indices.add(int(i * step))
rows = [rows[i] for i in sorted(indices)]
n = len(rows)
dists = [r["dist"] for r in rows]
snrs = [r["snr"] for r in rows]
auv_lats = [r["auv_lat"] for r in rows]
auv_lons = [r["auv_lon"] for r in rows]
auv_bbox = [min(auv_lons), min(auv_lats), max(auv_lons), max(auv_lats)]
out = {
"generated_at": datetime.now(timezone.utc).isoformat(),
"n_points": n,
"n_raw": n_raw,
"auv_bbox": auv_bbox,
"stats": {
"dist_min": round(min(dists), 3),
"dist_max": round(max(dists), 3),
"dist_median": round(statistics.median(dists), 3),
"snr_min": round(min(snrs), 4),
"snr_max": round(max(snrs), 4),
},
"points": rows,
}
usbl_out = OUTPUT_DIR / "usbl.json"
with open(usbl_out, "w") as f:
json.dump(out, f, separators=(",", ":"))
print(f"usbl.json: {n} points (raw={n_raw}) -> {usbl_out}")
# AUV track GeoJSON
coords = [[r["auv_lon"], r["auv_lat"]] for r in rows]
geojson = {
"type": "FeatureCollection",
"features": [{
"type": "Feature",
"geometry": {"type": "LineString", "coordinates": coords},
"properties": {"name": "AUV track (USBL projection)", "color": "#ff8800"},
}]
}
track_out = OUTPUT_DIR / "auv_track.geojson"
with open(track_out, "w") as f:
json.dump(geojson, f, separators=(",", ":"))
print(f"auv_track.geojson: {len(coords)} coords -> {track_out}")
# Sanity check: first point haversine vs USBL dist
r0 = rows[0]
hav = haversine_m(r0["usv_lat"], r0["usv_lon"], r0["auv_lat"], r0["auv_lon"])
print(f"Sanity [0]: USV=({r0['usv_lat']:.6f},{r0['usv_lon']:.6f}) AUV=({r0['auv_lat']:.6f},{r0['auv_lon']:.6f}) hav={hav:.2f}m USBL_dist={r0['dist']:.2f}m diff={abs(hav-r0['dist']):.3f}m")
if __name__ == "__main__":
main()